shapeit.fr


Tags Whois Backlink & Rankings Speed Safety Headers Similar Sites Keywords H Tags
Tags Whois Rank Speed Safety Headers Similar Sites Keywords H Tags

shapeit.fr Website Info

shapeit.fr (SHAPEIT) DNS looks Active and website looks Accessable. According to Google, website speed score is 0/100 and . Website looks safe for children. We detected the website language as en-gb.
shapeit.fr


shapeit.fr Website Tags

Domain Status:
✓ Active
Is Site Accessable?:
✓ Yes
SSL(https):
✗ No
Accessable Url:
http://www.shapeit.fr
Title:
SHAPEIT
Description:
Categories :
Education/Reference, Education
External Links:
71
Internal Links:
1
Canonical URL:
[Not Set]
Language:
en-gb
XML Sitemap:
✗ No
robots.txt:
✗ No
Favicon:
✗ No

shapeit.fr Domain & Whois Details

Refresh
Server Type:
Apache/2.4.46 (Fedora) OpenSSL/1.1.1k mod_perl/2.0
Hosting Location:
Country:France, City:Roubaix, Isp:OVH SAS, Org:OVH ISP
IP:
213.186.33.5

shapeit.fr Backlinks & Rankings

SEMRush URL Links:
7
Number of links to URL according to SemRush.
SEMRush Website Links:
9
Number of links to the website according to SemRush.
SEMRush Domain Links:
834
Number of links to SemRush Domain.

shapeit.fr Social Media

Facebook Comments:
0
Facebook Shares:
1
Facebook Reactions:
0

shapeit.fr Website Speed (Desktop) Check Now

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shapeit.fr Website Safety

Refresh
Last Check Date:
3/23/2023 2:33:09 PM
Fortiguard:
Education
Mcafee Category:
Education/Reference
OpenDNS:
BeFirst
Cloudflare DNS:
OK
MyWot Child Safety:
99

shapeit.fr HTTP Headers

Refresh
Accept-Ranges :
bytes
Connection :
Upgrade, Keep-Alive
Content-Length :
409554
Content-Type :
text/html; charset=UTF-8
Date :
Sun, 04 Jun 2023 09:41:16 GMT
ETag :
"63fd2-566c159cece40"
Keep-Alive :
timeout=5, max=100
Last-Modified :
Tue, 06 Mar 2018 16:58:25 GMT
Server :
Apache/2.4.46 (Fedora) OpenSSL/1.1.1k mod_perl/2.0.11 Perl/v5.30.3
Upgrade :
h2


shapeit.fr W3C HTML Validation Check Now

Last Check Date:
5/31/2023 12:00:00 AM
Errors:
869
Warnings:
0
Info:
86
Check Live:
Check shapeit.fr HTML Errors

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shapeit.fr Site H Tags

Check Now
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Citations
h2
What's new?
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Download and Licence
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Contact
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Getting started
h2
Algorithm parameters
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Input file options
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Model parameters
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Output file options
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Prephasing for imputation
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Phasing with a reference panel
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Phasing X chromosomes
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Using family information
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Read aware phasing
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Genotype calling from low coverage sequencing (1000G pipeline)
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Options
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File formats
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Plink PED / MAP file format for Unrelateds & Nuclear families
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Plink BED / BIM / FAM file format for Unrelateds & Nuclear families
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BED/BIM/FAM to PED/MAP
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Oxford GEN / SAMPLE file format for Unrelateds
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The genetic map
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HAPS / SAMPLE file format for haplotypes
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HAP / LEGEND / SAMPLE file format for haplotype reference panels
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Using phase uncertainty
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Version history
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Method1
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Method2
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SAMPLE file
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LEGEND file
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HAP file
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SAMPLE file
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HAPS file
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GEN file
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SAMPLE file
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GEN/SAMPLE to PED/MAP
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BIM file
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FAM file
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BED file
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PED file
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MAP file
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PED/MAP to BED/BIM/FAM conversion
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PED/MAP to GEN/SAMPLE conversion
h3
Example files
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Step 1: Define chromosome chunks for Beagle4
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Step 2: Run Beagle4
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Step 3: Convert Beagle4 output in SHAPEIT input
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Step 5: Run SHAPEIT
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Step 6: Ligate SHAPEIT chunks
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Step1: Extract phase informative reads
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Step2: phase the VCF using the extracted PIRs
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Phasing in general pedigrees
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Phasing of mother-father-child trios and parent-child duos
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Input file formats for X chromosome data
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Step1: Input data checks
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Step2.1: Phasing the data without reference panel
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Step2.2: Phasing the data with a reference panel
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Step1: Download the 1,000 Genomes phase 1 reference panel of haplotypes
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Step2: Alignment of the SNPs between the GWAS dataset and the reference panel
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Step3A: Phasing the GWAS dataset using the reference panel of haplotypes
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Step3B: Using the reference panel of haplotypes and no MCMC iterations
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Step1: Alignment of the SNPs
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Step2: Phasing the GWAS samples
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Step3: Imputation of the GWAS samples
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Log file
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Output best haplotypes in HAPS/SAMPLE format
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Output haplotype graphs to capture phasing uncertainty
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Subsets of phased haplotypes
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Convert the SHAPEIT haplotypes to other formats
h3
Conditioning states K (--states)
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Window size W (--window)
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Using the graphical model of SHAPEIT version 1 (--model-version1)
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Genetic map
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Effective population size
h3
Filter SNPs and individuals with a poor calling rate
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Split the dataset by chromosome
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Input file formats
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Implicit filenames
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Read GZIP or BZIP2 input files
h3
Data checks
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Subsets of unphased genotypes
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Multi-threading (--thread)
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Iteration number (--burn, --prune and --main)
h3
Seed specification (--seed)
h3
Speeding up phasing using multi-threading
h3
Short option names

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